
Boutique hotels in Nagasaki Prefecture
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Top-rated boutique hotels in Nagasaki Prefecture
Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

Ammonite Hotel (red room)
Ammonite Hotel is an oasis of travel and we are looking forward to serve you at our quiet and clean, beautiful rooms. We hope to make your Kyushu sightseeing better. We are an integrated resort “Genius Loci”. It is made up of a museum “abyss”, a porcelain and color shop “EMERALD”, and a restaurant “hoshi” on 1F, it’s perfect for dinner with a beautiful landscape. We hope you enjoy your dinner within a superior space and beautiful colors of food. ※Reservations required by the other day.

FUEL INN A - 3min to Tojinmachi station
FUEL INN is a friendly and passionate licensed hostel that would love to help you explore this energetic city. Not only our location is awesome, but the building itself is full of character with a stunning BLUE wall. Formerly a residential mansion, the building was converted to an astonishing traveler’s place. It is divided into 6 individual apartments with different interior. Our staff will try very best to assist you to make your journey fruitful and enlightenment

Guest house in Goto/Western bunk bed/4 people
Welcome to [Guesthouse Goto Jiko]. With the hope that travelers will reset their minds and cherish the time they spend remembering Goto. Goto Jiko, which was opened in March 2020, is a guesthouse x co-working space complex located in the center of Fukue Island in the Goto Islands. Each gender has its own toilet and shower room, and a spacious common kitchen is available for free use. All rooms have locks. There are many restaurants and pubs within walking distance.

Guest house in Goto/Private Western room/2 people
Welcome to [Guesthouse Goto Jiko]. With the hope that travelers will reset their minds and cherish the time they spend remembering Goto. Goto Jiko, which was opened in March 2020, is a guesthouse x co-working space complex located in the center of Fukue Island in the Goto Islands. Each gender has its own toilet and shower room, and a spacious common kitchen is available for free use. All rooms have locks. There are many restaurants and pubs within walking distance.

Guest house in Goto/Group family JPN room/5 people
Welcome to [Guesthouse Goto Jiko]. With the hope that travelers will reset their minds and cherish the time they spend remembering Goto. Goto Jiko, which was opened in March 2020, is a guesthouse x co-working space complex located in the center of Fukue Island in the Goto Islands. Each gender has its own toilet and shower room, and a spacious common kitchen is available for free use. All rooms have locks. There are many restaurants and pubs within walking distance.

Guest house in Goto/Private Japanese room/3 people
Welcome to [Guesthouse Goto Jiko]. With the hope that travelers will reset their minds and cherish the time they spend remembering Goto. Goto Jiko, which was opened in March 2020, is a guesthouse x co-working space complex located in the center of Fukue Island in the Goto Islands. Each gender has its own toilet and shower room, and a spacious common kitchen is available for free use. All rooms have locks. There are many restaurants and pubs within walking distance.

No Meals/【Misakikan】JPN+Western room NS/4 ppl/10pm
The Hiradokaijo Hotel offers Japanese- and Western-style rooms with ocean views. The hotel has 2 private open-air baths and 2 private baths with views. All rooms are equipped with a Japanese-style seating area with tatami mats. LCD TV, minibar, and tea/coffee maker are provided. Massage service and hotel's store are also available. Daily buffet breakfast which is available in the dining room offers Japanese and Western cuisine. Japanese meals are served for dinner.

No Meals/【Shiosaikan】Standard JPN S/5 ppl/10pm
The Hiradokaijo Hotel offers Japanese- and Western-style rooms with ocean views. The hotel has 2 private open-air baths and 2 private baths with views. All rooms are equipped with a Japanese-style seating area with tatami mats. LCD TV, minibar, and tea/coffee maker are provided. Massage service and hotel's store are also available. Daily buffet breakfast which is available in the dining room offers Japanese and Western cuisine. Japanese meals are served for dinner.

No Meals/【Shiosaikan】Standard JPN NS/5 ppl/10pm
The Hiradokaijo Hotel offers Japanese- and Western-style rooms with ocean views. The hotel has 2 private open-air baths and 2 private baths with views. All rooms are equipped with a Japanese-style seating area with tatami mats. LCD TV, minibar, and tea/coffee maker are provided. Massage service and hotel's store are also available. Daily buffet breakfast which is available in the dining room offers Japanese and Western cuisine. Japanese meals are served for dinner.

No Meals/【Misakikan】JPN+Western room S/4 ppl/10pm
The Hiradokaijo Hotel offers Japanese- and Western-style rooms with ocean views. The hotel has 2 private open-air baths and 2 private baths with views. All rooms are equipped with a Japanese-style seating area with tatami mats. LCD TV, minibar, and tea/coffee maker are provided. Massage service and hotel's store are also available. Daily buffet breakfast which is available in the dining room offers Japanese and Western cuisine. Japanese meals are served for dinner.
Popular amenities for Nagasaki Prefecture boutique hotels
Family-friendly boutique hotels

Guest house in Goto/Western bunk bed/4 people

Guest house in Goto/Private Western room/2 people

No Meals/【Misakikan】JPN+Western room NS/4 ppl/10pm

Ammonite Hotel (red room)

No Meals/【Shiosaikan】Standard JPN S/5 ppl/10pm

No Meals/【Shiosaikan】Standard JPN NS/5 ppl/10pm

FUEL INN A - 3min to Tojinmachi station

Guest house in Goto/Group family JPN room/5 people
Other boutique hotel holiday rentals

Guest house in Goto/Western bunk bed/4 people

Guest house in Goto/Private Western room/2 people

No Meals/【Misakikan】JPN+Western room NS/4 ppl/10pm

Ammonite Hotel (red room)

No Meals/【Shiosaikan】Standard JPN S/5 ppl/10pm

No Meals/【Shiosaikan】Standard JPN NS/5 ppl/10pm

FUEL INN A - 3min to Tojinmachi station

Guest house in Goto/Group family JPN room/5 people
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