
Boutique hotels in Marathon
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in Marathon
Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

Conch Key Villas #2 Peaceful waterfront lodging
Studio Two's waterfront rental is located on the ground level. Each unit comes with a boat slip and parking for your trailer. We can handle boats up to 25’. There is a boat ramp just 2 blocks away. We provide outside table and chairs, and just around the corner, the barbecue grill. Our accommodations include king bed, living and dining area, futon, polished terrazzo floors, waterfront patio, literally 6 feet from the water, full size and equipped kitchens, A/C and cable TV, DVD and Wi-Fi.

Large House w/ FREE Sailboat, Kayaks, Snorkel etc
The Main House is a cottage at Key Largo Cottages. We are located on the bay side of Key Largo near some of the best dive/snorkel sites, island excursions, bars, restaurants, & the Everglades. Experience water fun! A stay in one of our cottages comes with unlimited use of our kayaks, canoes, paddle boards, snorkel gear, fishing gear, &, of course, the use of one of our 22' sailboats, if you have recent sailing experience on keel boats! You won't find a better deal in the Keys!

Conch Key Villas #1. Fun, fishing & great sunsets
Studio One's waterfront rental is located on the ground level. Our units differ vastly from other Florida Keys lodgings because our property is right on Florida Bay. If you trailer your boat, the dockage is a few feet from the back door. Our docks can handle boats up to 25’ and you can park your trailer in our front lot. There is a boat ramp just two blocks away. Studio 1 can sleep 2 adults and one child (up to 12 years). We have a king size bed and a futon.

Marathon Beachfront | 2BR, Veranda + 2 Luxe Baths
Enjoy direct beach access from the Oceanfront Veranda | 2BR 2Qns 1King guestroom, a spacious beachfront retreat with a king bed, two queen beds, and two deluxe bathrooms. Relax on your private veranda, indulge in a spa-like bath with a rainfall shower and soaking tub, and enjoy modern comforts like complimentary WiFi and an entertainment system. Experience five pools, oceanfront dining, and endless adventures in the Florida Keys.

Marathon Oceanfront | ADA Queen + 5 Pools
Experience comfort and accessibility in the Oceanfront Balcony Queen ADA room. Designed for a seamless stay, this ADA-compliant retreat features a queen bed, a fully accessible deluxe bathroom, and a private oceanview terrace. Thoughtful details like wide doors, roll-in shower, and hearing-impaired features ensure ease and relaxation. Enjoy five pools, beachfront dining, and oceanfront luxury in the heart of the Florida Keys.

Marathon Beachfront | 1BR Veranda + Luxury Bath
Step directly onto the sand from the Oceanfront Veranda | 1BR King (Suite) in Marathon. This spacious beachfront retreat features a plush king bed, a queen sofa bed, and a private veranda. Indulge in a spa-like bath with a walk-in rainfall shower and enjoy modern comforts like complimentary WiFi and an entertainment system. Experience five pools, oceanfront dining, and endless adventures in the Florida Keys.

Wreckers House King Room - Adults Only
Adults-only building for guests ages 21+ only. Thoughtfully furnished with mixed metals and woods, the Wreckers House tells the story of ships and their crews of "wreckers" who once salvaged goods from the sunken ships in the Florida Keys. Enjoy a sunrise view and an ocean breeze from your private balcony that overlooks the pool and the Atlantic. This room has a mini fridge and an espresso machine.

Family Room in Duck Key | Sauna, Kayak & Pools
Gather the crew in the Family Oasis—a bright, roomy hideaway where bunk beds delight the kids and a plush king bed welcomes parents. Ideal for up to five guests, this relaxing space blends laid-back comfort with family-ready convenience. Located in Hawks Cay Resort, enjoy a full day of waterside fun, unwind in your oversized room, and let island time set the pace for your unforgettable stay.

Marathon Oceanfront Room | 2Queens + Spa-Like Bath
Wake up to breathtaking ocean views in the Oceanfront Balcony | Double Queen room. Featuring two plush queen beds, a spa-like bath with a deep soaking tub and walk-in rainfall shower, and a private oceanview balcony, this retreat offers the perfect blend of comfort and luxury. Experience premium amenities, five breathtaking resort pools, beachfront dining, and an array of endless adventures.

Marathon Oceanfront Room | King Bed + 5 Pools
Indulge in oceanfront luxury with the Oceanfront Balcony | King room. Featuring a plush king bed, a spa-like bath with a deep soaking tub and walk-in rainfall shower, and a private oceanview terrace, this serene retreat is perfect for relaxation. Enjoy modern comforts, complimentary WiFi, five pools, beachfront dining, and endless coastal adventures in the heart of the Florida Keys.

Marathon Beachfront | King Bed + Veranda
Wake up to breathtaking ocean views and step directly onto the sand from the Oceanfront Veranda | King room. This luxurious beachfront retreat features a plush king bed, a spa-like bath with a deep soaking tub and walk-in rainfall shower, and a private beachfront veranda. Enjoy modern comforts, five pools, oceanfront dining, and endless adventure in the Florida Keys.

Conch Key Villas #4- Overlooking Florida Bay
This upstairs unit is fully remodeled with new kitchen and bath. It has all new modern appliances with icemaker and filtered water as well as pots, pans, dishes, drip coffee maker, Keurig. USB chargers, smart TV and other modern conveniences. This unit has a private balcony with fantastic views of Florida Bay and the best sunsets in all the Keys.
Popular amenities for Marathon boutique hotels
Family-friendly boutique hotels

Duck Key Trip! | ADA Family Rm w/ Snorkeling + Spa

Poolside Room w/ Kayak & Sauna | No Hidden Fee!

King ADA w/ Views in Duck Key | Marina, Spa & Pool

Cozy Queen Rm in Duck Key | Sauna & Snorkeling

Tropical Duck Key Escape! | King Rm w/ Pools & Spa

Water View King Rm in Duck Key | Spa, Kayak & Pool
Boutique hotels with a patio

Conch Key Villas #1. Fun, fishing & great sunsets

Conch Key Villas #2 Peaceful waterfront lodging

Resort View Family Suite

Wreckers House Double Queen Room - Adults Only

Galleon King Suite - Adults Only
Other boutique hotel holiday rentals

Conch Key Villas #2 Peaceful waterfront lodging

Marathon Beachfront | King Bed + Veranda

Marathon Oceanfront Suite | Balcony + 2 Luxe Baths

Marathon Beachfront | 2BR, Veranda + 2 Luxe Baths

Conch Key Villas #1. Fun, fishing & great sunsets

Marathon Beachfront | 2Kings, Veranda + 2LuxeBaths

Conch Key Villas #4- Overlooking Florida Bay

Marathon Oceanfront Room | 2Queens + Spa-Like Bath
Quick stats about boutique hotels in Marathon

Total holiday rentals
Explore 30 holiday rentals in Marathon

Nightly prices starting at
Marathon holiday rentals start at £223 per night before taxes and fees

Verified guest reviews
Over 1,560 verified reviews to help you choose

Pet-friendly holiday rentals
Find 10 rentals that welcome pets

Holiday rentals with a pool
30 properties feature pools

Rentals with dedicated workspaces
10 properties have a dedicated workspace

Wifi availability
30 of Marathon holiday rentals include wifi access

Popular amenities for guests
Guests love Kitchen, Wifi and Pool across Marathon rentals

4.7 Average rating
Marathon stays receive an average rating of 4.7 out of 5 from guests
Destinations to explore
- Seminole Holiday rentals
- Central Florida Holiday rentals
- Miami Holiday rentals
- Orlando Holiday rentals
- Gold Coast Holiday rentals
- Miami Beach Holiday rentals
- Fort Lauderdale Holiday rentals
- Havana Holiday rentals
- Tampa Holiday rentals
- Four Corners Holiday rentals
- Kissimmee Holiday rentals
- Key West Holiday rentals
- Rentals with breakfast Marathon
- Fitness-friendly rentals Marathon
- Rentals with a hot tub Marathon
- Beachfront rentals Marathon
- Townhouse rentals Marathon
- Villa rentals Marathon
- Rentals with an EV charger Marathon
- Rentals with lake access Marathon
- Rentals with a washing machine and dryer Marathon
- Flat rentals Marathon
- Hotel rooms Marathon
- Rentals with outdoor seating Marathon
- Rentals with pools Marathon
- Family-friendly rentals Marathon
- House rentals Marathon
- Rentals with an accessible-height toilet Marathon
- Rentals with a fireplace Marathon
- Rentals with beach access Marathon
- Luxury rentals Marathon
- Rentals with a firepit Marathon
- Rentals with a kayak Marathon
- Apartment rentals Marathon
- Rentals with a patio Marathon
- Cottage rentals Marathon
- Beach house rentals Marathon
- Pet-friendly rentals Marathon
- Waterfront rentals Marathon
- Boutique hotels Monroe County
- Boutique hotels Florida
- Boutique hotels United States
- Everglades National Park
- Sombrero Beach
- Smathers Beach
- Bahia Honda State Park
- Theater of the Sea
- Calusa Campground
- Robbies Marina Of Islamorada
- The Turtle Hospital
- Ernest Hemingway Home & Museum
- Seven Mile Bridge
- Florida Keys Aquarium Encounters
- Fort Zachary Taylor Historic State Park
- Dolphin Research Center
- Founder's Park
- Southernmost Point
- Boyd's Key West Campground
- Key West Lighthouse Museum
- Key West Butterfly & Nature Conservatory
- History Of Diving Museum
- Harry Harris Beach and Park
- Venture Out Resort
- Curry Hammock State Park
- Bakers Cay Resort Key Largo Fb
- Mel Fisher Maritime Museum





