
Boutique hotels in Shinjuku
Find and book unique boutique hotels on Airbnb
Quick stats about boutique hotels in Shinjuku

Total holiday rentals
Explore 30 holiday rentals in Shinjuku

Nightly prices starting at
Shinjuku holiday rentals start at £29 per night before taxes and fees

Verified guest reviews
Over 4,750 verified reviews to help you choose

Rentals with dedicated workspaces
10 properties have a dedicated workspace

Wifi availability
30 of Shinjuku holiday rentals include wifi access

Popular amenities for guests
Guests love Kitchen, Wifi and Pool across Shinjuku rentals

4.7 Average rating
Shinjuku stays receive an average rating of 4.7 out of 5 from guests

Nearby attractions
Shinjuku’s top spots include Shinjuku Gyoen National Garden, Sunshine Aquarium and Tokyo Metropolitan Theatre
Top-rated boutique hotels in Shinjuku
Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

The Hideout Tokyo -(Double Room)-
We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

Standard Room|Accessible|20mShinjuku|Kagurazaka
Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.

④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes
Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!

Newly opened hotel-style t suite Subway 3 minutes
I GO HOTEL is in central Shinjuku, a 3-minute walk to Higashi-Shinjuku Station (Fukutoshin Line, Exit B1) and 5 minutes to the Oedo Line, with direct access to Shibuya, Harajuku, Ikebukuro. Shinjuku Station are within walking distance. Direct airport limousine bus from Haneda stops near Higashi-Shinjuku Station, perfect for late-night arrivals and early-morning flights. Near Kabukicho, with 24-hour convenience stores, restaurants, drugstores, and Don Quijote nearby. Central yet quiet.

Luxury Art Penthouse | Tokyo Bay Ocean View |10pax
Welcome to Art House 日の出, one-of-a-kind penthouse overlooking spectacular Tokyo Bay.Created by visionary creators and architects, this top-floor private residence, which blends contemporary art with traditional Japanese aesthetics, just opened in January 2026 as an immersive space.This entire 87㎡ floor is reserved exclusively for your family, group of friends (up to 10 guests). Designed as a “Art Gallery Hotel” offers a premium, memorable stay beyond the ordinary accommodation experience.

condominium with everything you need for dailylife
・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

12-min walk to Sensoji - Boutique Hotel
一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

3 mins to Subway |Quad room with 2 double beds
I GO HOTEL is in central Shinjuku, a 3-minute walk to Higashi-Shinjuku Station (Fukutoshin Line, Exit B1) and 5 minutes to the Oedo Line, with direct access to Shibuya, Harajuku, Ikebukuro, and Roppongi. Shin-Okubo Station, Seibu-Shinjuku Station, Okubo Station, and Shinjuku Station are within walking distance. Near Kabukicho and Shin-Okubo, with 24-hour convenience stores, restaurants, drugstores, and Don Quijote nearby. Central yet quiet.

3 min to Sensoji | Family 2BR w/kitchen & laundry
Opened in the summer of 2021, this apartment hotel was designed by a well-known Japanese designer. The building has 9 floors and 16 Quad rooms, ideal for families or small groups of 4–5 guests. The hotel is located along the main road near Senso-ji Temple and Asakusa Shrine. Front desk hours: 10:00 AM – 8:00 PM Online customer support: 8:00 PM – 12:00 AM Late-night front desk service: 10:00 PM – 6:00 AM (available on five nights per week)

TheMillennialsShibuya/Mixed Smart Pod/1 Guest
Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.

Pegasus Hotel (Japanese room for 3) 502
Hi This is Pegasus Hotel New open in 2020, we have two types of standard double rooms and family rooms. The environment is clean and tidy. It is a three-minute walk from Asakusa Bridge Station. , Every year will have Sumidagawa Fireworks Festival, Japanese traditional culture boat house you also can have a nice dinner in the boat, you can have a good time in nearby Tokyo Bay Odaiba Rainbow Bridge, etc.

2nd Floor Artistic Twin Room Inspired by Noh Dream
Welcome to SHISHI NO MA – a spacious 2nd floor room with twin semi-double mattresses, designed for comfort and inspired by the dreamlike world of mugen Nōh (phantasmagoric Noh theater). It is a design hotel that makes use of minimalist design created by Japanese architects and designers. JR山手線の大塚駅から徒歩4分 *The room is private & self check in and out. *JR Yamanote line to Shinjuku 10min / Shibuya 18min
Popular amenities for Shinjuku boutique hotels
Family-friendly boutique hotels

Keyakian Danran Tatami, traditional Japanese style

Hotel Suite | 7 min JR Shin-Okubo | 4 min Subway

Tabiji Shibuya | 10 min walk from Shibuya station

DOMO HOTEL-1

No Service Hotel 301 / 7 min to Asakusa

Japanese Ryokan | Ueno/Akihabara | 10 Guests OK

Rill Hotel Asakusa 401 Spacious, Comfortable, Quiet and Cozy

Designer loft near Tamachi for families and groups
Boutique hotels with a patio

Washing Machine, Apartment Suite, 5 Min Walk to Skytree Station, Direct Access to Airport, Kitchen, Nearby Izakaya, Amin Hotel

8 min to Yamanote Line | 3BR Family Suite | 49㎡

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

5 min walk to Skytree Station, 100 inch projection screen in the movie room, direct access to the airport, kitchen, washing machine, bathtub
Other boutique hotel holiday rentals

Room 201, 3 mins walk from Asakusabashi Station, Asakusa, Akihabara, Ueno neighborhood, kitchenware, kitchen, washing machine, direct access to Haneda and Narita Airport

【IKOI_302】Well-Equipped Hidden Gem: Hibiya Line

Economy Double Room with Sofa Bed Max4 Comfort2

[Yado Ori] Enjoy the atmosphere of Oriya's downtown | 2 minutes walk from Iriya Station/6 minutes from Oriya Station, spacious 60㎡ 2BR with comfortable Japanese modern space!

[1]2min walk Sta丨Shinjuku area丨free WIFI丨Single丨

4 single beds in Tokyo/2 train stations: Studio B

Studio apt 6p|Shibuya Sta 8min walk|Wifi|Kitchen

3 mins to Subway | Rare Triple Room | Balcony
When is the best time to visit Shinjuku?
| Month | Jan | Feb | Mar | Apr | May | Jun | Jul | Aug | Sept | Oct | Nov | Dec |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg. price | £67 | £66 | £71 | £76 | £59 | £52 | £64 | £53 | £78 | £80 | £81 | £72 |
| Avg. temp | 6°C | 7°C | 10°C | 15°C | 19°C | 22°C | 26°C | 27°C | 24°C | 18°C | 13°C | 8°C |
Destinations to explore
- Apartment rentals Shinjuku
- Pet-friendly rentals Shinjuku
- House rentals Shinjuku
- Waterfront rentals Shinjuku
- Serviced apartment rentals Shinjuku
- Hostel rentals Shinjuku
- Family-friendly rentals Shinjuku
- Flat rentals Shinjuku
- Aparthotel rentals Shinjuku
- Rentals with a hot tub Shinjuku
- Rentals with breakfast Shinjuku
- Villa rentals Shinjuku
- Loft rentals Shinjuku
- Hotel rooms Shinjuku
- Boutique hotels Tokyo Prefecture
- Boutique hotels Japan
- Tokyo Sta.
- Shibuya Station
- Tokyo Disneyland
- Asakusa Sta.
- Akihabara Sta.
- Shimo-Kitazawa Sta.
- Ikebukuro
- Tokyo Disney Resort
- Tokyo Skytree
- Nippori Sta.
- Ueno Sta.
- Yokohama Sta.
- Oshiage Sta.
- Takadanobaba Sta.
- Tokyo Tower
- Kinshicho Sta.
- Hakone-Yumoto Sta.
- Kita-Senju Sta.
- Shinagawa
- Omiya Sta.
- Yoyogi Park
- Tokyo Dome
- Akabane Sta.
- Gotanda Sta.
- Things to do Shinjuku
- Food tours Shinjuku
- Landmarks Shinjuku
- Tastings Shinjuku
- Cultural tours Shinjuku
- Art workshops Shinjuku
- Dining Shinjuku
- Outdoors Shinjuku
- Cooking Shinjuku
- Things to do Tokyo Prefecture
- Galleries Tokyo Prefecture
- Cultural tours Tokyo Prefecture
- Landmarks Tokyo Prefecture
- Water sports Tokyo Prefecture
- Tastings Tokyo Prefecture
- Cooking Tokyo Prefecture
- Dining Tokyo Prefecture
- Outdoors Tokyo Prefecture
- Art workshops Tokyo Prefecture
- Wellness Tokyo Prefecture
- Workouts Tokyo Prefecture
- Shopping and fashion Tokyo Prefecture
- Food tours Tokyo Prefecture
- Performances Tokyo Prefecture
- Things to do Japan
- Wellness Japan
- Wildlife Japan
- Workouts Japan
- Food tours Japan
- Museums Japan
- Performances Japan
- Galleries Japan
- Art workshops Japan
- Architecture Japan
- Landmarks Japan
- Tastings Japan
- Outdoors Japan
- Cooking Japan
- Cultural tours Japan
- Shopping and fashion Japan
- Dining Japan
- Water sports Japan







