Boutique hotels in San Juan Islands

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in San Juan Islands

Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

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Superhost
An architectural structure displays a combination of brick and stucco, featuring detailed timber accents and multiple windows. Pedestrians are seen along the sidewalk, and traffic signals are visible nearby, indicating a lively urban street scene.
Hotel room in Seattle
4.76 out of 5 average rating, 211 reviews

College Inn - Premium 2 Queen Room with Private Bath

Our newest room - with its own private bathroom! Our family-owned College Inn is an authentic European-style hotel in the heart of Seattle's vibrant University District & on the campus of the University of Washington, surrounded by restaurants, shops, cafes, and pubs. Newly remodeled in 2019, our guests enjoy modern comforts while in a hotel that is on the National Register of Historic Places. *In the tradition of "European-style" hotels, we have a shared kitchen, complimentary coffee & tea, and a Loft common area.

Guest favourite
A modern guesthouse features a sloped roof and wooden exterior, set against a backdrop of tall evergreen trees. Large glass doors provide a view into the interior, blending harmoniously with the natural surroundings.
Hotel room in Friday Harbor
4.98 out of 5 average rating, 109 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Guest favourite
A spacious bedroom features a king bed adorned with crisp linens and decorative pillows. Large sliding glass doors open to a private deck, revealing a hot tub and lush garden view. Warm wood accents are complemented by soft lighting and neutral decor.
Hotel room in Sequim
5 out of 5 average rating, 5 reviews

Lavender King Suite, kitchen, Hot tub

King bed in its own room. Euro-lounger in Livingroom that makes into a double. Your own private bath has a giant tile rain shower, HOT TUB off back deck facing water. Full kitchen including microwave, 3/4 size refrigerator, stove and all pots, pans, dishes and utensils. The dining area is in the sun-room and looks out towards the bay. Electric fireplace and 50in TV!! Coffee and tea are provided. Other amenities include hairdryer, fine microfiber bathrobes, cable TV, VCR and DVD.

Superhost
A spacious room features a queen bed with white bedding, complemented by two pillows. Large glass doors lead to a balcony, while a wicker chair is positioned beside a closet. An entrance to a private bathroom is visible, with light-colored towels arranged neatly.
Hotel room in Port Townsend
5 out of 5 average rating, 10 reviews

View of historic downtown Port Townsend

Wake up to views of downtown Port Townsend in our seaport boutique hotel! This second-floor room offers one queen bed, full private bath, HDTV, small refrigerator, microwave, in-room coffee/tea service. There is free Wi-Fi and on-site parking. Hair dryer, iron with board. Located in the heart of Port Townsend's cultural and historic district, the Swan is adjacent to Point Hudson Marina and just steps away from educational programs at the Northwest Maritime Center.

Top guest favourite
The hot tub is framed by natural wood beams, with light filtering through the surrounding trees, creating a warm ambiance. The gentle ripples of the water reflect the soft illumination from the nearby residence, enhancing the serene outdoor space.
Hotel room in Cobble Hill
5 out of 5 average rating, 160 reviews

Hot Tub, Sauna, Luxury. Welcome to Lavender View!

Serenity and quality abound. We want your stay at Lavender View to be EXCEPTIONAL. We offer luxurious accommodation in a resort-like setting on 2.5 acres. We take care of the fine details so you can simply relax and enjoy. We use the Airbnb platform exclusively to handle all of our reservations. However, we encourage you to visit our own website (Lavenderview dot ca). The “Book Now” button will take you back to this Airbnb listing to make your reservation.

The historic 1908 inn is depicted from above, featuring a striking red exterior and decorative architectural details. Surrounding greenery and mature trees create a serene backdrop, while additional structures are visible in the distance, indicating a spacious estate.
Hotel room in Port Townsend
4.56 out of 5 average rating, 280 reviews

Historic Innkeepers Apartment at winery

Private apartment at beautiful 1908 Inn at winery close to Port Townsend. Quiet setting 5 minutes to town. Main room includes kitchenette, dining area and couch that converts to a bed, the bedroom has a queen size bed, plus a laundry room, bathroom with claw foot tub, private entry, and private porch. Beautiful 12 acre estate with winery tasting room on site. Pets must be be pre-approved and must be in care of owners at all times and leashed when outdoors.

A spacious suite features a king bed nestled against the sloped ceiling, complemented by two floral armchairs. A gas fireplace is positioned within a wooden surround, enhancing the cozy atmosphere. Natural light enters through the window, illuminating the light-colored carpet and furniture.
Hotel room in Coupeville
4.95 out of 5 average rating, 22 reviews

Anchorage Inn - Room #7 - Crows Nest

This spacious suite claims the entire 3rd floor. It has a King bed for 2, living room w/gas fireplace and French doors opening onto a Juliet balcony, overlooking Penn Cove, Mt. Baker and the historic Coupeville. The private bath has an air jetted tub and shower. Find also a smart TV streaming, and fiber WiFi. Continental breakfast is available to all guests. Due to our rooms being individually unique, prices differ base on the room and seasonal prices.

A cozy room features a wooden bunk bed with comfortable mattresses and a chair positioned by a large window. Natural light brightens the space, showcasing the earthy tones of the furnishings and the inviting view of greenery outside.
Hotel room in Friday Harbor
4.51 out of 5 average rating, 119 reviews

Wayfarers Guest House. Private, driftwood bunks #3

Thank you for finding the Wayfarers Rest, providing comfortable and convenient lodging for active travelers since 1999. Room 3 is a private room that can sleep up to 3, all linens provided. The common areas you will share with other guests (fully equipped kitchen, dining, living room and bathrooms) Wayfarers Rest is located just 4 blocks from the ferry terminal and two blocks from main St., easy walking. Free Wi-Fi, parking & chicken eggs. Pet friendly

Guest favourite
A serene studio space is highlighted by timber walls and large windows offering views of the water. A spacious bed is adorned with lavender-themed pillows. A round table sits in the center, complemented by a cozy seating area, creating a relaxing atmosphere.
Hotel room in Sequim
4.9 out of 5 average rating, 207 reviews

Lavender Cabin, Pvt Beach & View, Firepit (#4)

Cottage #4: Lavender Cottage • Views: Enjoy sunsets, seals, herons, and eagles soaring over the harbor. • Beach Access: Trail to private beach & kayak rentals right outside. • Amenities: Small kitchen, serene lavender surroundings, and a loveseat or bed for relaxation. • Location: Minutes from Lavender Farms, Game Farm, and 15 mins to town. • Panoramic Views: Relax and take in the beauty through large windows. •. This is a studio cabin

Superhost
The heritage building is surrounded by landscaped gardens and mature trees. A set of stone steps leads to the entrance, framed by greenery and flowers. The architecture features distinct elements, including a sloped roof and decorative windows, with a castle view visible in the background.
Hotel room in Victoria
4.74 out of 5 average rating, 159 reviews

Superior queen room #8

The Craigmyle is a heritage building. Elegant, inviting, and completely unique – The Craigmyle redefines boutique hotel living in the heart of Victoria, BC. Tucked away in one of the city’s gorgeous residential neighborhoods, just two minutes from the historic Craigdarroch Castle, our hotel places the city’s top attractions at your doorstep, while maintaining a sense of calm and tranquility that sure to relax and inspire you.

Superhost
A queen-sized bed is centered in the room, partially covered with a beige and green comforter. Two wall-mounted lamps provide illumination beside the bed. A full-length mirror is positioned adjacent to a rustic, wooden wall. Light wooden flooring complements the cozy seating area with two chairs.
Hotel room in Port Angeles
4.88 out of 5 average rating, 123 reviews

#6 ✤Perfect Family Retreat- Olympic National Park✤

Our recently remodeled 2 bedroom suite is perfect for a getaway for two couples, or friends! Located in the heart Olympic National Park, each room features a comfy, queen-sized bed. The kitchenette includes a sink, mini-fridge, and microwave and makes for an ideal refreshment area. The full-sized and private bathroom can easily accommodate all guests. (Please note that there is no door between the two rooms.)

Guest favourite
A compact room features a queen size bed dressed in a burgundy coverlet. Wooden wall paneling surrounds the space, complemented by framed landscape artwork. A small dining table with chairs is visible, along with a lamp and a door leading to the outside.
Hotel room in Port Angeles
4.8 out of 5 average rating, 740 reviews

Angeles Motel - Small Room w Queen Bed

Hi, Welcome to Angeles Motel, We are not pet friendly and No Smoking motel, We have Free WIFI, cable TV, guests laundry room and parking lot on premises, Very close to National Park and ferry and 6 blocks away to downtown. We do not welcome the guests with bad reviews, We do not welcome the guests with no reviews, the Guests with bad reviews or with no reviews please try somewhere else, Thanks!

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